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CD4 T cell receptor hierarchies are stable and independent of HIV-mediated dysregulation of immune homeostasis
 rds file
Cell number:   26797163  
Protein number:   34  
Technology:   CyTOF  
Species:   Homo sapiens  
Tissue:   blood  
Cell:   immune cells   
Disease:   HIV  
Condition:   people with HIV (PWH) in the first 500 days following ART initiation (A5248, n = 10)  
Citation:   Sponaugle, A. et al. CD4 T cell receptor hierarchies are stable and independent of HIV-mediated dysregulation of immune homeostasis [Data set]. Zenodo (2022). https://doi.org/10.5281/zenodo.7495836  
Source platform:   zenodo; GitHub  
Source link: https://zenodo.org/record/7495836#.Y7T78nZBwuU; https://github.com/glab-hiv/immune-recovery
Summary
Marker Info:

Analysis plots of cells or proteins within dataset:
MDS plot showing similarities between samples in dataset. Colored by sample conditions.
Barplot showing the number of cells measured for each sample in the dataset. Bars are colored by experimental condition.
Clustering of samples (rows) and markers (columns) based on the median (arcsinh-transformed) marker expression across all cells measured for each sample. Colored by experimental condition. Dendrograms are based on hierarchical clustering with Euclidean distance metric and average linkage
Non-redundancy scores for markers and all samples in the dataset. The points represent the per-sample NR scores (colored by experimental conditions), while open white circles indicate the mean NR scores from all the samples. Markers on the x-axis are sorted according to the decreasing average NRS

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